We propose a technique that enables the creation of quantum discord between two distant nodes, each containing a cavity consist of the Bose-Einstein condensate, by applying a non-ideal Bell-like detection on the output modes of optical cavities. We find the covariance matrix of the system after the non-ideal Bell-like detection, showing explicitly that one enables manipulation of the quantum correlations, and particularly quantum discord, between remote Bose-Einstein condensates. We also find that the non-ideal Bell-like detection can create entanglement between distant Bose-Einstein condensates at the two remote sites